diff --git a/.gitignore b/.gitignore
index a4f8dc2..464e0eb 100644
--- a/.gitignore
+++ b/.gitignore
@@ -17,9 +17,21 @@
 # 旧実装（参照用に手元へ置くが Git 管理しない）
 org/
 
+# Python
+__pycache__/
+*.py[cod]
+.venv/
+*.egg-info/
+
+# ツールのキャッシュ
+.pytest_cache/
+.ruff_cache/
+
+# ビルド・配布成果物
+build/
+dist/
+
 # -- プロジェクト立ち上げ時に有効化する（.claude/rules/git-conventions.md 参照） --
 # .env
 # .env.*
 # node_modules/
-# build/
-# dist/
diff --git a/.python-version b/.python-version
new file mode 100644
index 0000000..e4fba21
--- /dev/null
+++ b/.python-version
@@ -0,0 +1 @@
+3.12
diff --git a/CLAUDE.md b/CLAUDE.md
index 2658adf..47bbc96 100644
--- a/CLAUDE.md
+++ b/CLAUDE.md
@@ -4,7 +4,7 @@
 
 ## 開発進捗
 
-最新: プロジェクト立ち上げ（/setup 全フェーズ）完了．次は PLAN_02 ステップ 1（プロジェクト骨格）
+最新: PLAN_02 ステップ 1（プロジェクト骨格）完了．次はステップ 2（csv_io）
 ※ 本欄は**最新ステップ 1 行のみ上書き更新**．詳細な進捗履歴（動機・設計判断・失敗パターン）は [docs/PROGRESS.md](docs/PROGRESS.md) に追記する．運用ルールは `.claude/rules/progress-log.md` を参照（該当ファイル編集時に自動ロードされる）．
 
 ## 必須ルール（コード実装時）
@@ -60,7 +60,7 @@
 - 技術スタック: docs/02_ENV/ENV_01_技術スタック.md
 - 環境構築手順: docs/02_ENV/ENV_02_環境構築手順.md
 - 管理者用環境構築手順: docs/02_ENV/ENV_03_管理者用環境構築手順.md
-- ※ 開発コマンド（ENV_04）はステップ 1 で pyproject.toml とともに作成する
+- 開発コマンド: docs/02_ENV/ENV_04_開発コマンド.md
 
 ### 03_PLAN（計画）
 
diff --git a/data/data.csv b/data/data.csv
new file mode 100644
index 0000000..7d41b20
--- /dev/null
+++ b/data/data.csv
@@ -0,0 +1,85 @@
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+70.43864865,14.78795115,0.558710065,1,0,0,0,0,0,1,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,1,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,1,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0
diff --git "a/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md" "b/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md"
new file mode 100644
index 0000000..af33103
--- /dev/null
+++ "b/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md"
@@ -0,0 +1,67 @@
+# 開発コマンド (Development Commands)
+
+日常の開発で使うコマンド一覧．**コマンドを実行する前に必ず本ファイルを参照する**（推測でコマンドを試さない）．
+コマンドが新しく確定・変更されたときは本ファイルを更新する．
+
+前提: [ENV_02_環境構築手順.md](ENV_02_環境構築手順.md) のセットアップが済んでいること．
+すべてリポジトリ直下（`pyproject.toml` のある場所）で実行する．OS（Windows / macOS）による差は無い．
+
+## 環境 (Environment)
+
+| 目的 | コマンド |
+| --- | --- |
+| 依存パッケージを同期（初回・`uv.lock` 更新時） | `uv sync` |
+| 依存パッケージを追加 | `uv add <パッケージ>` |
+| 開発用（テスト・lint 等）の依存を追加 | `uv add --dev <パッケージ>` |
+| 依存パッケージを削除 | `uv remove <パッケージ>` |
+| インストール済みパッケージを確認 | `uv pip list` |
+
+※ `pip install` は使わない（ENV_02「環境再現性のルール」）．
+
+## 起動 (Run)
+
+| 目的 | コマンド |
+| --- | --- |
+| アプリを起動 | `uv run python -m tiasjudge` |
+| コンソールスクリプトで起動 | `uv run tiasjudge` |
+
+※ GUI は PLAN_02 ステップ 6〜7 で実装する．それまでは未実装のメッセージを表示して終了する．
+
+## テスト (Test)
+
+| 目的 | コマンド |
+| --- | --- |
+| 全テストを実行 | `uv run pytest` |
+| 特定ファイルを実行 | `uv run pytest tests/core/test_color.py` |
+| 特定テストを実行 | `uv run pytest tests/core/test_color.py::test_xyz_to_lab` |
+| 失敗時に詳細を表示 | `uv run pytest -vv` |
+| 最初の失敗で中断 | `uv run pytest -x` |
+
+※ テストが 1 件も収集されない場合，pytest は終了コード 5 で終わる．テスト対象の指定ミスを疑うこと．
+
+## lint・フォーマット (Lint & Format)
+
+| 目的 | コマンド |
+| --- | --- |
+| lint チェック | `uv run ruff check .` |
+| lint の自動修正 | `uv run ruff check --fix .` |
+| フォーマット実行 | `uv run ruff format .` |
+| フォーマット差分の確認のみ | `uv run ruff format --check .` |
+
+## コミット前の確認 (Pre-commit Checks)
+
+以下の 3 つがすべて通ることを確認してからコミットする．
+
+```bash
+uv run ruff check .
+uv run ruff format --check .
+uv run pytest
+```
+
+## 同梱データ (Bundled Data)
+
+| ファイル | 内容 |
+| --- | --- |
+| `data/data.csv` | SVM 学習データ（旧実装の `data.csv` を UTF-8 に変換して同梱．SPEC_02 参照） |
+
+※ 変換行列 CSV・舌画像は実行時にユーザーが選択するためリポジトリに含めない．
diff --git "a/docs/04_SPEC/SPEC_02_\350\250\272\346\226\255\343\203\255\343\202\270\343\203\203\343\202\257\344\273\225\346\247\230.md" "b/docs/04_SPEC/SPEC_02_\350\250\272\346\226\255\343\203\255\343\202\270\343\203\203\343\202\257\344\273\225\346\247\230.md"
index 5dd88ca..63aa6aa 100644
--- "a/docs/04_SPEC/SPEC_02_\350\250\272\346\226\255\343\203\255\343\202\270\343\203\203\343\202\257\344\273\225\346\247\230.md"
+++ "b/docs/04_SPEC/SPEC_02_\350\250\272\346\226\255\343\203\255\343\202\270\343\203\203\343\202\257\344\273\225\346\247\230.md"
@@ -62,3 +62,4 @@
 
 - 1 行目: ヘッダ（`L,a,b,紫,暗赤,紅,淡紅,淡白,…` の繰り返し）
 - 2 行目以降: 84 サンプル．列 1〜3 が L\*a\*b\*，列 4〜193 が医師 38 名 × 5 色の 0/1（各医師 5 列の one-hot）
+- ※ 実ファイルは 198 列（医師ブロック 39 個分）あるが，末尾の 39 番目のブロック 5 列は全サンプルで全 0 の未使用列である（有効な評価データは上記の 38 名分＝193 列）．全 0 列は「正例が 2 未満の列は学習せずスコア 0」の規則により学習対象外となるため診断結果には影響しない．旧実装の読込列数（193 か 198 か）はステップ 2（csv_io）で `org/src` の読込コードと突き合わせて確定すること
diff --git a/docs/PROGRESS.md b/docs/PROGRESS.md
index e6ad506..1b1fb47 100644
--- a/docs/PROGRESS.md
+++ b/docs/PROGRESS.md
@@ -19,3 +19,7 @@
 - [x] **/setup フェーズ 5 完了（規約整備）**: Python スタック向け path-scoped rules（coding-style / project-structure / testing / error-handling）を作成．パッケージ名は `tiasjudge`（src レイアウト，core と gui を分離），テストは旧実装との回帰テストを最重視，GUI 自動テストは書かない方針
 - [x] **/setup フェーズ 6 完了（開発計画）**: PLAN_02 を作成．core 先行の 8 ステップ構成（骨格 → csv_io → color → svm → 回帰テスト → GUI 2 画面 → 配布）．M1 = 旧実装との結果一致の証明（ステップ 5，旧 exe での入出力採取にユーザー協力が必要），M2 = アプリ置き換え可能
 - [x] **/setup フェーズ 7 完了（立ち上げ完了）**: CLAUDE.md を最終更新（概要にスタック明記・必須ルール・ドキュメント一覧）．プロジェクト立ち上げフローはすべて完了．次は PLAN_02 ステップ 1（プロジェクト骨格）を `/implement` で開始する
+- [x] **PLAN_02 ステップ 1 完了（プロジェクト骨格）**: pyproject.toml（uv + hatchling，src レイアウト）・`src/tiasjudge/{core,gui}` 骨格・`data/data.csv`（CP932→UTF-8 変換配置）・ENV_04（開発コマンド）を作成．`uv sync` → `uv run pytest` 通過を確認
+  - 設計判断: opencv-python は無指定だと 5.0.x が入るため，ENV_01 の「OpenCV 4.x」と `cv2.ml.SVM` の挙動同一性を優先して `>=4.10,<5` に固定
+  - 発見: `data.csv` の実体は 198 列（医師 39 ブロック）だが末尾ブロックは全 0 の未使用列で，有効データは SPEC_02 どおり 38 名分＝193 列（SPEC_02 に注記済み）．旧実装の読込列数はステップ 2 で `org/src` と突き合わせて確定する
+  - 未実装・後段: `__main__.py` はプレースホルダ（ステップ 6 で GUI 起動に差し替え）．pytest-cov はステップ 2 以降で導入検討
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..6e10143
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,46 @@
+[project]
+name = "tiasjudge"
+version = "0.1.0"
+description = "舌診支援システム（舌画像の ROI 色から舌色を 5 分類する）"
+requires-python = ">=3.12,<3.13"
+dependencies = [
+    "numpy>=2.0",
+    # ENV_01 の選定どおり OpenCV 4.x 系に固定する（cv2.ml.SVM の挙動同一性のため）
+    "opencv-python>=4.10,<5",
+    "pyside6>=6.7",
+]
+
+[project.scripts]
+tiasjudge = "tiasjudge.__main__:main"
+
+[dependency-groups]
+dev = [
+    "pytest>=8.0",
+    "ruff>=0.6",
+]
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/tiasjudge"]
+
+[tool.ruff]
+line-length = 100
+target-version = "py312"
+src = ["src", "tests"]
+# Claude Code 用のフック等は本プロジェクトのコード規約の対象外とする
+extend-exclude = [".claude"]
+
+[tool.ruff.lint]
+# E/W: pycodestyle, F: pyflakes, I: isort, N: pep8-naming,
+# UP: pyupgrade, B: flake8-bugbear, SIM: flake8-simplify
+select = ["E", "W", "F", "I", "N", "UP", "B", "SIM"]
+
+[tool.ruff.format]
+quote-style = "double"
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+addopts = "-ra"
diff --git a/src/tiasjudge/__init__.py b/src/tiasjudge/__init__.py
new file mode 100644
index 0000000..454b358
--- /dev/null
+++ b/src/tiasjudge/__init__.py
@@ -0,0 +1,3 @@
+"""TIASjudge: 舌診支援システム．"""
+
+__version__ = "0.1.0"
diff --git a/src/tiasjudge/__main__.py b/src/tiasjudge/__main__.py
new file mode 100644
index 0000000..e585746
--- /dev/null
+++ b/src/tiasjudge/__main__.py
@@ -0,0 +1,14 @@
+"""エントリポイント（`python -m tiasjudge`）．
+
+GUI は PLAN_02 ステップ 6〜7 で実装する．現時点では起動可能性の確認のみ行う．
+"""
+
+
+def main() -> int:
+    """アプリを起動する．戻り値はプロセスの終了コード．"""
+    print("TIASjudge: GUI は未実装です（PLAN_02 ステップ 6 で実装予定）")
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())
diff --git a/src/tiasjudge/core/__init__.py b/src/tiasjudge/core/__init__.py
new file mode 100644
index 0000000..f80a289
--- /dev/null
+++ b/src/tiasjudge/core/__init__.py
@@ -0,0 +1,5 @@
+"""診断ロジック（GUI 非依存）．
+
+このパッケージから PySide6・GUI モジュールを import してはならない
+（`.claude/rules/project-structure.md` の依存方向のルール）．
+"""
diff --git a/src/tiasjudge/gui/__init__.py b/src/tiasjudge/gui/__init__.py
new file mode 100644
index 0000000..47b0a7e
--- /dev/null
+++ b/src/tiasjudge/gui/__init__.py
@@ -0,0 +1,4 @@
+"""PySide6 による画面（SPEC_01）．
+
+表示とイベント処理に徹し，診断計算は `tiasjudge.core` に委譲する．
+"""
diff --git a/tests/conftest.py b/tests/conftest.py
new file mode 100644
index 0000000..ddd37ba
--- /dev/null
+++ b/tests/conftest.py
@@ -0,0 +1,26 @@
+"""テスト共通のフィクスチャ．"""
+
+from pathlib import Path
+
+import pytest
+
+REPO_ROOT = Path(__file__).resolve().parents[1]
+
+
+@pytest.fixture(scope="session")
+def repo_root() -> Path:
+    """リポジトリ直下（`pyproject.toml` のある場所）を返す．"""
+    return REPO_ROOT
+
+
+@pytest.fixture(scope="session")
+def data_csv_path(repo_root: Path) -> Path:
+    """同梱学習データ `data/data.csv` のパスを返す（project-structure.md）．"""
+    return repo_root / "data" / "data.csv"
+
+
+@pytest.fixture(scope="session")
+def data_csv_rows(data_csv_path: Path) -> list[list[str]]:
+    """`data.csv` を UTF-8 で読み，全行をカンマ分割した 2 次元リストで返す．"""
+    text = data_csv_path.read_text(encoding="utf-8")
+    return [line.split(",") for line in text.splitlines()]
diff --git a/tests/test_core_gui_independence.py b/tests/test_core_gui_independence.py
new file mode 100644
index 0000000..a59eb91
--- /dev/null
+++ b/tests/test_core_gui_independence.py
@@ -0,0 +1,75 @@
+"""`core/` の GUI 非依存の検証（project-structure.md「依存方向のルール」）．
+
+- `core/` は PySide6・GUI に依存してはならない（import 禁止）
+- 逆方向（`gui/` → `core/`）は許可される
+"""
+
+import ast
+import subprocess
+import sys
+from pathlib import Path
+
+FORBIDDEN_ROOTS = {"PySide6", "PyQt5", "PyQt6", "shiboken6"}
+
+
+def _core_source_files(repo_root: Path) -> list[Path]:
+    return sorted((repo_root / "src" / "tiasjudge" / "core").rglob("*.py"))
+
+
+def _imported_roots(source_path: Path) -> set[str]:
+    """ファイル内の import 文から，トップレベルのモジュール名を収集する．"""
+    tree = ast.parse(source_path.read_text(encoding="utf-8"), filename=str(source_path))
+    roots: set[str] = set()
+    for node in ast.walk(tree):
+        if isinstance(node, ast.Import):
+            for alias in node.names:
+                roots.add(alias.name)
+        elif isinstance(node, ast.ImportFrom) and node.level == 0 and node.module:
+            roots.add(node.module)
+    return roots
+
+
+def test_core_package_has_source_files(repo_root: Path) -> None:
+    """走査対象が 0 件だと以降のテストが空振りするため前提を確認する．"""
+    assert _core_source_files(repo_root), "core/ に Python ファイルが無い"
+
+
+def test_core_does_not_import_gui_toolkit(repo_root: Path) -> None:
+    """静的解析: core/ 配下のどのファイルも GUI ツールキットを import しない．"""
+    violations: list[tuple[str, str]] = []
+    for source_path in _core_source_files(repo_root):
+        for imported in _imported_roots(source_path):
+            if imported.split(".")[0] in FORBIDDEN_ROOTS:
+                violations.append((source_path.name, imported))
+    assert violations == []
+
+
+def test_core_does_not_import_project_gui_package(repo_root: Path) -> None:
+    """静的解析: core/ が `tiasjudge.gui` に依存しない．"""
+    violations: list[tuple[str, str]] = []
+    for source_path in _core_source_files(repo_root):
+        for imported in _imported_roots(source_path):
+            if imported.startswith("tiasjudge.gui") or imported == "gui":
+                violations.append((source_path.name, imported))
+    assert violations == []
+
+
+def test_importing_core_does_not_load_gui_toolkit(repo_root: Path) -> None:
+    """実行時: `tiasjudge.core` を import しても GUI ツールキットがロードされない．"""
+    code = (
+        "import sys\n"
+        "import tiasjudge.core\n"
+        "loaded = sorted(m for m in sys.modules if m.split('.')[0] in "
+        f"{sorted(FORBIDDEN_ROOTS)!r})\n"
+        "print(loaded)\n"
+    )
+    result = subprocess.run(
+        [sys.executable, "-c", code],
+        cwd=repo_root,
+        capture_output=True,
+        text=True,
+        encoding="utf-8",
+        errors="replace",
+    )
+    assert result.returncode == 0, result.stderr
+    assert result.stdout.strip() == "[]"
diff --git a/tests/test_data_csv.py b/tests/test_data_csv.py
new file mode 100644
index 0000000..8bf2338
--- /dev/null
+++ b/tests/test_data_csv.py
@@ -0,0 +1,188 @@
+"""同梱学習データ `data/data.csv` の検証（SPEC_02「データファイル形式」）．
+
+SPEC_02 の記述は以下．
+
+- 1 行目: ヘッダ（`L,a,b,紫,暗赤,紅,淡紅,淡白,…` の繰り返し）
+- 2 行目以降: 84 サンプル．列 1〜3 が L\\*a\\*b\\*，
+  列 4 以降が 医師 × 5 色の 0/1（医師ごとに one-hot）
+- 文字コードは UTF-8 に統一する（ENV_01「現行実装からの移行対応」）
+
+※ 医師数（SPEC_02 は 38 名）は PLAN_02 ステップ 2 で旧実装の読込コードと突き合わせて確定するため，
+  本ファイルでは実データの構造から導ける不変条件を検証する．
+"""
+
+from pathlib import Path
+
+import pytest
+
+COLOR_LABELS = ["紫", "暗赤", "紅", "淡紅", "淡白"]
+EXPECTED_SAMPLE_COUNT = 84
+LAB_COLUMN_COUNT = 3
+
+
+class TestEncoding:
+    """文字コード（ENV_01: Shift-JIS → UTF-8 に統一）．"""
+
+    def test_is_valid_utf8(self, data_csv_path: Path) -> None:
+        data_csv_path.read_bytes().decode("utf-8")
+
+    def test_has_no_bom(self, data_csv_path: Path) -> None:
+        assert not data_csv_path.read_bytes().startswith(b"\xef\xbb\xbf")
+
+    def test_color_labels_are_readable_as_utf8(self, data_csv_rows: list[list[str]]) -> None:
+        """UTF-8 として読んだとき色名が文字化けせず取得できる．"""
+        header = data_csv_rows[0]
+        assert header[LAB_COLUMN_COUNT : LAB_COLUMN_COUNT + 5] == COLOR_LABELS
+
+
+class TestHeader:
+    """ヘッダ行の構造．"""
+
+    def test_first_three_columns_are_lab(self, data_csv_rows: list[list[str]]) -> None:
+        assert data_csv_rows[0][:LAB_COLUMN_COUNT] == ["L", "a", "b"]
+
+    def test_evaluation_columns_are_multiple_of_five(self, data_csv_rows: list[list[str]]) -> None:
+        """評価列は 5 色 1 組（医師 1 名分）の繰り返しである．"""
+        evaluation_column_count = len(data_csv_rows[0]) - LAB_COLUMN_COUNT
+        assert evaluation_column_count % len(COLOR_LABELS) == 0
+        assert evaluation_column_count // len(COLOR_LABELS) >= 38
+
+    def test_color_labels_repeat_in_fixed_order(self, data_csv_rows: list[list[str]]) -> None:
+        header = data_csv_rows[0]
+        evaluation = header[LAB_COLUMN_COUNT:]
+        doctor_count = len(evaluation) // len(COLOR_LABELS)
+        for index in range(doctor_count):
+            block = evaluation[index * 5 : index * 5 + 5]
+            assert block == COLOR_LABELS, f"医師 {index} 番目のブロックが {block}"
+
+
+class TestShape:
+    """行数・列数．"""
+
+    def test_sample_count(self, data_csv_rows: list[list[str]]) -> None:
+        """ヘッダを除く 84 サンプル（SPEC_02）．"""
+        assert len(data_csv_rows) - 1 == EXPECTED_SAMPLE_COUNT
+
+    def test_all_rows_have_same_column_count(self, data_csv_rows: list[list[str]]) -> None:
+        column_counts = {len(row) for row in data_csv_rows}
+        assert len(column_counts) == 1, f"列数が不揃い: {sorted(column_counts)}"
+
+    def test_no_empty_cells(self, data_csv_rows: list[list[str]]) -> None:
+        empty = [
+            (row_index, column_index)
+            for row_index, row in enumerate(data_csv_rows)
+            for column_index, cell in enumerate(row)
+            if cell.strip() == ""
+        ]
+        assert empty == []
+
+
+class TestLabColumns:
+    """L\\*a\\*b\\* 列（SVM の入力 3 次元）．"""
+
+    def test_all_lab_values_parse_as_float(self, data_csv_rows: list[list[str]]) -> None:
+        for row_index, row in enumerate(data_csv_rows[1:], start=2):
+            for column_index in range(LAB_COLUMN_COUNT):
+                cell = row[column_index]
+                try:
+                    float(cell)
+                except ValueError:  # pragma: no cover - 失敗時のみ
+                    pytest.fail(f"{row_index} 行 {column_index + 1} 列が数値でない: {cell!r}")
+
+    def test_lightness_is_within_lab_range(self, data_csv_rows: list[list[str]]) -> None:
+        """L\\* は 0〜100 の範囲に収まる（Lab 色空間の定義域）．"""
+        values = [float(row[0]) for row in data_csv_rows[1:]]
+        assert all(0.0 <= value <= 100.0 for value in values), (min(values), max(values))
+
+    @pytest.mark.parametrize("column_index", [1, 2])
+    def test_chromatic_axes_are_within_practical_range(
+        self, data_csv_rows: list[list[str]], column_index: int
+    ) -> None:
+        """a\\*・b\\* は舌色として現実的な範囲（|値| <= 128）に収まる．"""
+        values = [float(row[column_index]) for row in data_csv_rows[1:]]
+        assert all(-128.0 <= value <= 128.0 for value in values), (min(values), max(values))
+
+    def test_samples_are_not_all_identical(self, data_csv_rows: list[list[str]]) -> None:
+        """学習データとして意味を持つよう Lab がばらついている．"""
+        lab_values = {tuple(row[:LAB_COLUMN_COUNT]) for row in data_csv_rows[1:]}
+        assert len(lab_values) > 1
+
+
+class TestEvaluationColumns:
+    """医師評価列（SVM の教師データ）．"""
+
+    @staticmethod
+    def _doctor_blocks(row: list[str]) -> list[list[str]]:
+        evaluation = row[LAB_COLUMN_COUNT:]
+        return [evaluation[i : i + 5] for i in range(0, len(evaluation), 5)]
+
+    def test_values_are_binary(self, data_csv_rows: list[list[str]]) -> None:
+        values = {cell for row in data_csv_rows[1:] for cell in row[LAB_COLUMN_COUNT:]}
+        assert values <= {"0", "1"}, f"0/1 以外の値: {sorted(values - {'0', '1'})}"
+
+    def test_each_doctor_block_is_one_hot_or_all_zero(self, data_csv_rows: list[list[str]]) -> None:
+        """各医師 5 列は one-hot（未評価の医師は全 0）．"""
+        for row_index, row in enumerate(data_csv_rows[1:], start=2):
+            for doctor_index, block in enumerate(self._doctor_blocks(row)):
+                total = sum(int(cell) for cell in block)
+                assert total in (0, 1), f"{row_index} 行 医師 {doctor_index} が {block}"
+
+    def test_at_least_38_doctors_evaluated_every_sample(
+        self, data_csv_rows: list[list[str]]
+    ) -> None:
+        """SPEC_02 が想定する 38 名分以上の評価が全サンプルに存在する．"""
+        for row_index, row in enumerate(data_csv_rows[1:], start=2):
+            evaluated = sum(
+                1 for block in self._doctor_blocks(row) if sum(int(cell) for cell in block) == 1
+            )
+            assert evaluated >= 38, f"{row_index} 行の有効評価が {evaluated} 名分"
+
+    def test_every_color_appears_as_positive_example(self, data_csv_rows: list[list[str]]) -> None:
+        """5 色すべてに正例が存在する（SVM 学習が成立する前提）．"""
+        positives = dict.fromkeys(COLOR_LABELS, 0)
+        for row in data_csv_rows[1:]:
+            for block in self._doctor_blocks(row):
+                for label, cell in zip(COLOR_LABELS, block, strict=True):
+                    positives[label] += int(cell)
+        assert all(count > 0 for count in positives.values()), positives
+
+    def test_trailing_all_zero_doctor_blocks_are_documented(
+        self, data_csv_rows: list[list[str]]
+    ) -> None:
+        """全サンプルで全 0 の医師ブロック（＝実質未使用の列）の数を記録する．
+
+        SPEC_02 は 医師 38 名（193 列）と記すが，実ファイルは 198 列ある．
+        差分が「全サンプル全 0 の末尾ブロック」であることを固定し，
+        PLAN_02 ステップ 2 で旧実装の読込列数を確定する際の根拠とする．
+        """
+        blocks = [self._doctor_blocks(row) for row in data_csv_rows[1:]]
+        doctor_count = len(blocks[0])
+        all_zero = [
+            index
+            for index in range(doctor_count)
+            if all(sum(int(cell) for cell in row[index]) == 0 for row in blocks)
+        ]
+        effective_doctor_count = doctor_count - len(all_zero)
+        assert effective_doctor_count == 38, (
+            f"有効な医師数 {effective_doctor_count}（全 0 ブロック: {all_zero}）"
+        )
+        assert all_zero == list(range(38, doctor_count)), (
+            f"全 0 ブロックが末尾以外にある: {all_zero}"
+        )
+
+
+class TestFileIntegrity:
+    """旧実装ファイルからの変換忠実性（ENV_04「同梱データ」）．"""
+
+    def test_numeric_content_matches_original_when_available(
+        self, repo_root: Path, data_csv_rows: list[list[str]]
+    ) -> None:
+        """`org/src` がある環境では，数値が旧 data.csv と完全一致する．"""
+        original_path = repo_root / "org" / "src" / "tonguediagnosisMFC2" / "data.csv"
+        if not original_path.is_file():
+            pytest.skip("旧実装 org/src が無い環境のためスキップ")
+        original_text = original_path.read_bytes().decode("cp932")
+        original_rows = [line.split(",") for line in original_text.splitlines()]
+        assert len(original_rows) == len(data_csv_rows)
+        for converted, original in zip(data_csv_rows[1:], original_rows[1:], strict=True):
+            assert converted == original
diff --git a/tests/test_package_skeleton.py b/tests/test_package_skeleton.py
new file mode 100644
index 0000000..1017247
--- /dev/null
+++ b/tests/test_package_skeleton.py
@@ -0,0 +1,112 @@
+"""パッケージ骨格の検証（PLAN_02 ステップ 1 / project-structure.md）．
+
+仕様上要求されるのは以下．
+
+- `src/tiasjudge/` の src レイアウト．配下に `core/`（診断ロジック）と `gui/`（PySide6 画面）
+- `python -m tiasjudge` で起動できるエントリポイント（`__main__.py`）
+- 同梱データ `data/` と テスト `tests/`
+"""
+
+import importlib
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+
+class TestDirectoryLayout:
+    """ディレクトリ構成（project-structure.md）．"""
+
+    @pytest.mark.parametrize(
+        "relative_path",
+        [
+            "src/tiasjudge",
+            "src/tiasjudge/core",
+            "src/tiasjudge/gui",
+            "data",
+            "tests",
+            "docs",
+        ],
+    )
+    def test_required_directories_exist(self, repo_root: Path, relative_path: str) -> None:
+        assert (repo_root / relative_path).is_dir()
+
+    @pytest.mark.parametrize(
+        "relative_path",
+        [
+            "pyproject.toml",
+            "src/tiasjudge/__init__.py",
+            "src/tiasjudge/__main__.py",
+            "src/tiasjudge/core/__init__.py",
+            "src/tiasjudge/gui/__init__.py",
+            "data/data.csv",
+            "docs/02_ENV/ENV_04_開発コマンド.md",
+        ],
+    )
+    def test_required_files_exist(self, repo_root: Path, relative_path: str) -> None:
+        assert (repo_root / relative_path).is_file()
+
+    def test_org_is_not_tracked_by_git(self, repo_root: Path) -> None:
+        """旧実装 `org/` は参照専用で Git 管理外（project-structure.md）．"""
+        result = subprocess.run(
+            ["git", "ls-files", "org"],
+            cwd=repo_root,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        assert result.stdout.strip() == ""
+
+    def test_data_csv_is_tracked_or_stageable(self, repo_root: Path) -> None:
+        """同梱データ `data/data.csv` は Git 管理対象（無視されていない）．"""
+        result = subprocess.run(
+            ["git", "check-ignore", "data/data.csv"],
+            cwd=repo_root,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode != 0, "data/data.csv が .gitignore で除外されている"
+
+
+class TestImportablePackages:
+    """パッケージが import できること．"""
+
+    @pytest.mark.parametrize(
+        "module_name",
+        ["tiasjudge", "tiasjudge.core", "tiasjudge.gui", "tiasjudge.__main__"],
+    )
+    def test_import(self, module_name: str) -> None:
+        assert importlib.import_module(module_name) is not None
+
+    def test_package_is_installed_from_src_layout(self, repo_root: Path) -> None:
+        """import されるパッケージが `src/tiasjudge` であること（editable install）．"""
+        module = importlib.import_module("tiasjudge")
+        assert module.__file__ is not None
+        assert Path(module.__file__).resolve().parent == (repo_root / "src" / "tiasjudge").resolve()
+
+    def test_version_is_defined(self) -> None:
+        module = importlib.import_module("tiasjudge")
+        assert isinstance(module.__version__, str)
+        assert module.__version__ != ""
+
+
+class TestEntryPoint:
+    """エントリポイント（ENV_04「起動」）．"""
+
+    def test_main_is_callable_and_returns_exit_code(self) -> None:
+        main_module = importlib.import_module("tiasjudge.__main__")
+        assert callable(main_module.main)
+        assert main_module.main() == 0
+
+    def test_python_m_tiasjudge_exits_successfully(self, repo_root: Path) -> None:
+        """`python -m tiasjudge` が正常終了する（GUI 未実装でも起動確認は通る）．"""
+        result = subprocess.run(
+            [sys.executable, "-m", "tiasjudge"],
+            cwd=repo_root,
+            capture_output=True,
+            text=True,
+            encoding="utf-8",
+            errors="replace",
+        )
+        assert result.returncode == 0, result.stderr
diff --git a/tests/test_pyproject_config.py b/tests/test_pyproject_config.py
new file mode 100644
index 0000000..35820ba
--- /dev/null
+++ b/tests/test_pyproject_config.py
@@ -0,0 +1,87 @@
+"""`pyproject.toml` の設定検証（PLAN_02 ステップ 1 / ENV_01 技術スタック）．
+
+ステップ 1 の完了条件は「`pyproject.toml`（uv・Ruff・pytest 設定）」であり，
+採用技術は ENV_01 のとおり Python 3.12・PySide6・opencv-python(4.x)・NumPy・pytest・Ruff．
+"""
+
+import tomllib
+from pathlib import Path
+
+import pytest
+
+
+@pytest.fixture(scope="session")
+def pyproject(repo_root: Path) -> dict:
+    return tomllib.loads((repo_root / "pyproject.toml").read_text(encoding="utf-8"))
+
+
+class TestProjectMetadata:
+    def test_project_name(self, pyproject: dict) -> None:
+        assert pyproject["project"]["name"] == "tiasjudge"
+
+    def test_requires_python_312(self, pyproject: dict) -> None:
+        """ENV_01: 言語は Python 3.12．"""
+        assert ">=3.12" in pyproject["project"]["requires-python"]
+
+    def test_python_version_file_pins_312(self, repo_root: Path) -> None:
+        version_file = repo_root / ".python-version"
+        assert version_file.is_file()
+        assert version_file.read_text(encoding="utf-8").strip().startswith("3.12")
+
+    @pytest.mark.parametrize("package", ["numpy", "opencv-python", "pyside6"])
+    def test_runtime_dependencies_declared(self, pyproject: dict, package: str) -> None:
+        declared = [
+            dependency.split(">")[0].split("<")[0].split("=")[0].strip().lower()
+            for dependency in pyproject["project"]["dependencies"]
+        ]
+        assert package in declared
+
+    def test_opencv_is_pinned_to_major_version_4(self, pyproject: dict) -> None:
+        """ENV_01: `cv2.ml.SVM` の挙動同一性のため OpenCV 4.x 系に固定する．"""
+        opencv = next(
+            dependency
+            for dependency in pyproject["project"]["dependencies"]
+            if dependency.lower().startswith("opencv-python")
+        )
+        assert "<5" in opencv.replace(" ", "")
+
+    @pytest.mark.parametrize("package", ["pytest", "ruff"])
+    def test_dev_dependencies_declared(self, pyproject: dict, package: str) -> None:
+        dev = [
+            dependency.split(">")[0].split("<")[0].split("=")[0].strip().lower()
+            for dependency in pyproject["dependency-groups"]["dev"]
+        ]
+        assert package in dev
+
+
+class TestToolConfiguration:
+    def test_pytest_testpaths_points_to_tests(self, pyproject: dict) -> None:
+        assert pyproject["tool"]["pytest"]["ini_options"]["testpaths"] == ["tests"]
+
+    def test_ruff_targets_py312(self, pyproject: dict) -> None:
+        assert pyproject["tool"]["ruff"]["target-version"] == "py312"
+
+    def test_ruff_lint_rules_selected(self, pyproject: dict) -> None:
+        selected = set(pyproject["tool"]["ruff"]["lint"]["select"])
+        assert {"E", "F", "I"} <= selected
+
+    def test_wheel_packages_use_src_layout(self, pyproject: dict) -> None:
+        packages = pyproject["tool"]["hatch"]["build"]["targets"]["wheel"]["packages"]
+        assert packages == ["src/tiasjudge"]
+
+
+class TestLockFile:
+    def test_uv_lock_exists(self, repo_root: Path) -> None:
+        """ENV_01: 依存の完全な再現のため `uv.lock` を管理する．"""
+        assert (repo_root / "uv.lock").is_file()
+
+    def test_uv_lock_is_not_git_ignored(self, repo_root: Path) -> None:
+        import subprocess
+
+        result = subprocess.run(
+            ["git", "check-ignore", "uv.lock"],
+            cwd=repo_root,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode != 0, "uv.lock が .gitignore で除外されている"
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..a76bf88
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,216 @@
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