diff --git a/.github/dependabot.yml b/.github/dependabot.yml index f8a59b4..7e449be 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -2,8 +2,8 @@ # 脆弱性検出（Dependabot alerts / security updates）はリポジトリ設定で有効化済み（本ファイルとは独立に動く） version: 2 updates: - # requirements.txt / requirements-dev.txt / pyproject.toml - - package-ecosystem: "pip" + # pyproject.toml + uv.lock + - package-ecosystem: "uv" directory: "/" schedule: interval: "weekly" diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/README.md b/README.md index 2c47a66..66f709a 100644 --- a/README.md +++ b/README.md @@ -13,13 +13,10 @@ ## セットアップ -Python 3.11 以上が必要です．詳細は [docs/02_ENV/ENV_02_環境構築手順.md](docs/02_ENV/ENV_02_環境構築手順.md) を参照してください． +[uv](https://docs.astral.sh/uv/) が必要です（Python 3.12 は uv が用意します）．詳細は [docs/02_ENV/ENV_02_環境構築手順.md](docs/02_ENV/ENV_02_環境構築手順.md) を参照してください． ```bash -python -m venv .venv -.venv\Scripts\activate # Windows（macOS/Linux は source .venv/bin/activate） -pip install -r requirements.txt -pip install -r requirements-dev.txt +uv sync # uv.lock どおりに .venv を作成 ``` 画像データは `data/`，解析結果は `output/` に置きます（どちらも `.gitignore` 対象）． @@ -28,17 +25,17 @@ ```bash # PNG（白板画像 1 枚 / ディレクトリ一括） -python scripts/run_uniformity.py --image data/smtias/whiteboard/xxx.png -python scripts/run_uniformity.py --image data/smtias/whiteboard/ +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/xxx.png +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/ # DNG（定量モード，LSC 補正あり） -python scripts/run_uniformity_dng.py --image data/smtias/quantitative/xxx.dng +uv run python scripts/run_uniformity_dng.py --image data/smtias/quantitative/xxx.dng # ROI 選択（対話的に矩形を選び config/roi_config.json へ保存） -python scripts/select_roi.py --image data/smtias/whiteboard/xxx.png +uv run python scripts/select_roi.py --image data/smtias/whiteboard/xxx.png # 結果ビューア（Streamlit） -streamlit run scripts/viewer.py +uv run streamlit run scripts/viewer.py ``` ROI は `config/roi_config.json` のキー（既定 `smtias.whiteboard`）で指定します． @@ -60,7 +57,7 @@ ## テスト ```bash -python -m pytest +uv run pytest ``` ## ドキュメント diff --git "a/docs/02_ENV/ENV_01_\346\212\200\350\241\223\343\202\271\343\202\277\343\203\203\343\202\257.md" "b/docs/02_ENV/ENV_01_\346\212\200\350\241\223\343\202\271\343\202\277\343\203\203\343\202\257.md" index 36c8797..be44b01 100644 --- "a/docs/02_ENV/ENV_01_\346\212\200\350\241\223\343\202\271\343\202\277\343\203\203\343\202\257.md" +++ "b/docs/02_ENV/ENV_01_\346\212\200\350\241\223\343\202\271\343\202\277\343\203\203\343\202\257.md" @@ -24,17 +24,17 @@ | --- | --- | | Ruff | リンター・フォーマッター（高速，Flake8 + Black + isort 互換） | | pytest | テストフレームワーク | -| pip + venv | パッケージ管理・仮想環境（研究用途のため軽量構成） | +| uv | パッケージ管理・仮想環境（`uv.lock` で依存の全バージョンを固定し，解析結果の再現性を担保する．Python は `.python-version` で 3.12 に固定） | ## 実行環境 (Runtime Environment) - **OS**: Windows 11（ローカル PC） -- **実行方法**: CLI スクリプト（`python` コマンドで実行） +- **実行方法**: CLI スクリプト（`uv run python` で実行） - **Jupyter Notebook**: 必要に応じて探索的解析に使用（メインの解析パイプラインはスクリプトで実装） ## 将来導入予定 (Planned) -以下は requirements に含めているが，**現状のコードでは未使用**（将来機能用の予約）． +以下は依存（`pyproject.toml`）に含めているが，**現状のコードでは未使用**（将来機能用の予約）． | ライブラリ | 予定用途 | | --- | --- | diff --git "a/docs/02_ENV/ENV_02_\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" "b/docs/02_ENV/ENV_02_\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" index 1f8af47..817f0cd 100644 --- "a/docs/02_ENV/ENV_02_\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" +++ "b/docs/02_ENV/ENV_02_\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" @@ -2,7 +2,7 @@ ## 前提条件 (Prerequisites) -- Python 3.11 以上がインストール済みであること +- [uv](https://docs.astral.sh/uv/) がインストール済みであること（Windows: `winget install --id=astral-sh.uv -e`．Python 本体は uv が `.python-version`（3.12）に従って用意するため，別途のインストールは必須ではない） - Git がインストール済みであること - GitHub CLI (`gh`) がインストール済みであること - `bash` が使えること（Windows では Git for Windows 付属の Git Bash）．Claude Code のフック（`.claude/settings.json`）は `bash .claude/hooks/run_python.sh` 経由で Python を起動するため，Python と bash のどちらかが欠けるとリポジトリ外アクセス制限フックがファイル操作をすべてブロックする @@ -18,35 +18,18 @@ cd SmTIAS-Evaluation ``` -### 仮想環境の作成・有効化 (Create Virtual Environment) +### 仮想環境の作成と依存パッケージのインストール (Create Environment & Install Dependencies) ```bash -python -m venv .venv +uv sync ``` -- Windows: - -```bash -.venv\Scripts\activate -``` - -- macOS/Linux: - -```bash -source .venv/bin/activate -``` - -### 依存パッケージのインストール (Install Dependencies) - -```bash -pip install -r requirements.txt -pip install -r requirements-dev.txt -``` +`uv.lock` に固定されたバージョンで `.venv` が作成される（開発用の `dev` グループ（ruff・pytest）も既定で入る）．以降のコマンドは `uv run <コマンド>` で実行すれば，仮想環境を有効化する必要はない． ### 動作確認 (Verify Installation) ```bash -python -c "import cv2, numpy, scipy, pandas, matplotlib, streamlit, skimage, PIL, rawpy; print('OK')" +uv run python -c "import cv2, numpy, scipy, pandas, matplotlib, streamlit, skimage, PIL, rawpy; print('OK')" ``` `OK` と表示されれば成功． diff --git "a/docs/02_ENV/ENV_03_\347\256\241\347\220\206\350\200\205\347\224\250\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" "b/docs/02_ENV/ENV_03_\347\256\241\347\220\206\350\200\205\347\224\250\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" index ddb6049..a283713 100644 --- "a/docs/02_ENV/ENV_03_\347\256\241\347\220\206\350\200\205\347\224\250\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" +++ "b/docs/02_ENV/ENV_03_\347\256\241\347\220\206\350\200\205\347\224\250\347\222\260\345\242\203\346\247\213\347\257\211\346\211\213\351\240\206.md" @@ -21,7 +21,7 @@ gh api repos/rintoHasegawa/SmTIAS-Evaluation/automated-security-fixes ``` -依存パッケージの定期更新 PR（Dependabot version updates）は `.github/dependabot.yml` で設定する（pip・github-actions を週 1 回，マイナー／パッチは 1 PR にまとめる）．Dependabot の PR と alert は `/deps-update` で処理する． +依存パッケージの定期更新 PR（Dependabot version updates）は `.github/dependabot.yml` で設定する（uv・github-actions を週 1 回，マイナー／パッチは 1 PR にまとめる）．Dependabot の PR と alert は `/deps-update` で処理する． ## 設定ファイルの配置 (Configuration Files) @@ -29,11 +29,11 @@ | ファイル | 用途 | | --- | --- | -| `requirements.txt` | 実行時の依存パッケージ | -| `requirements-dev.txt` | 開発用ツール | +| `pyproject.toml` | 依存パッケージ（`dependencies`・開発用の `[dependency-groups] dev`）・プロジェクトメタデータ・pytest 設定 | +| `uv.lock` | 依存の全バージョンの固定（`uv lock` で生成．手で編集しない） | +| `.python-version` | Python バージョンの固定（3.12） | | `.gitignore` | Git 管理対象外の定義 | | `ruff.toml` | Ruff（リンター・フォーマッター）の設定 | -| `pyproject.toml` | プロジェクトメタデータ・pytest 設定 | | `.github/dependabot.yml` | 依存パッケージの定期更新 PR の設定 | ## 初期ディレクトリの作成 (Create Directories) diff --git "a/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md" "b/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md" index 851fd98..1fb7132 100644 --- "a/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md" +++ "b/docs/02_ENV/ENV_04_\351\226\213\347\231\272\343\202\263\343\203\236\343\203\263\343\203\211.md" @@ -2,17 +2,43 @@ 日常の開発で使うコマンドの一覧．人間とエージェントがコマンドを推測せずに済むよう，ここを唯一の参照先とする．コマンドが確定・変更されたら本ファイルに反映する． -※ すべてプロジェクトルートで，仮想環境（`.venv`）を有効化した状態で実行する（構築手順は [ENV_02](ENV_02_環境構築手順.md)）．グローバルの Python には pytest 等が入っていない場合がある． +※ すべてプロジェクトルートで実行する．`uv run` 経由で実行すれば仮想環境の有効化は不要（構築手順は [ENV_02](ENV_02_環境構築手順.md)）．グローバルの Python には pytest 等が入っていない． + +## 依存パッケージ (Dependencies) + +```bash +# uv.lock どおりに .venv を同期（clone 直後・pull 後・依存更新 PR の検証前） +uv sync + +# 依存の追加・削除（pyproject.toml と uv.lock が更新される．開発用は --dev） +uv add <パッケージ> +uv remove <パッケージ> + +# ロックの更新（全体 / 特定パッケージ） +uv lock --upgrade +uv lock --upgrade-package <パッケージ> +``` + +## 依存更新の検証スイート (Verification Suite) + +`/deps-update` のローカル検証など，依存を更新した後に「壊れていないか」を確かめるときはこの 2 つを実行する． + +```bash +uv sync +uv run pytest +``` + +※ `ruff check` は既存コードに違反が残っている（主に E501 行長）ため，現時点では検証スイートに含めない． ## テスト (Test) ```bash # 全テスト（testpaths = tests は pyproject.toml で設定済み） -pytest +uv run pytest # 特定のテストファイル・詳細出力 -pytest tests/analysis/test_uniformity.py -pytest -v +uv run pytest tests/analysis/test_uniformity.py +uv run pytest -v ``` テストの書き方は `.claude/rules/testing.md` を参照． @@ -21,31 +47,31 @@ ```bash # lint（設定は ruff.toml） -ruff check . +uv run ruff check . # 自動修正・フォーマット -ruff check . --fix -ruff format . +uv run ruff check . --fix +uv run ruff format . ``` ## 解析スクリプト (Analysis Scripts) ```bash # PNG の照明均一性評価（単一画像 / ディレクトリ一括） -python scripts/run_uniformity.py --image data/smtias/whiteboard/xxx.png -python scripts/run_uniformity.py --image data/smtias/whiteboard/ +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/xxx.png +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/ # DNG の照明均一性評価 -python scripts/run_uniformity_dng.py --image data/smtias/quantitative/xxx.dng +uv run python scripts/run_uniformity_dng.py --image data/smtias/quantitative/xxx.dng # ROI の対話的選択（config/roi_config.json に保存） -python scripts/select_roi.py --image data/smtias/whiteboard/xxx.png --key smtias.whiteboard +uv run python scripts/select_roi.py --image data/smtias/whiteboard/xxx.png --key smtias.whiteboard # 結果ビューア -streamlit run scripts/viewer.py +uv run streamlit run scripts/viewer.py ``` -- `scripts/compare_*.py`・`plot_radial_clean.py` 等の比較・作図スクリプトは，各ファイル冒頭の docstring「使い方」を参照する +- `scripts/compare_*.py`・`plot_radial_clean.py` 等の比較・作図スクリプトは，各ファイル冒頭の docstring「使い方」を参照する（`python` を `uv run python` に読み替える） - 入力は `data/`，出力は `output/`（いずれも Git 管理外） ## Claude Code フックのテスト (Hook Tests) diff --git "a/docs/04_SPEC/SPEC_02_\347\205\247\346\230\216\345\235\207\344\270\200\346\200\247\350\251\225\344\276\241\343\202\242\343\203\253\343\202\264\343\203\252\343\202\272\343\203\240.md" "b/docs/04_SPEC/SPEC_02_\347\205\247\346\230\216\345\235\207\344\270\200\346\200\247\350\251\225\344\276\241\343\202\242\343\203\253\343\202\264\343\203\252\343\202\272\343\203\240.md" index d44b85d..805c150 100644 --- "a/docs/04_SPEC/SPEC_02_\347\205\247\346\230\216\345\235\207\344\270\200\346\200\247\350\251\225\344\276\241\343\202\242\343\203\253\343\202\264\343\203\252\343\202\272\343\203\240.md" +++ "b/docs/04_SPEC/SPEC_02_\347\205\247\346\230\216\345\235\207\344\270\200\346\200\247\350\251\225\344\276\241\343\202\242\343\203\253\343\202\264\343\203\252\343\202\272\343\203\240.md" @@ -75,7 +75,7 @@ ### 起動コマンド ```bash -python scripts/select_roi.py --image data/smtias/whiteboard/<画像ファイル名>.png --config config/roi_config.json --roi smtias.whiteboard +uv run python scripts/select_roi.py --image data/smtias/whiteboard/<画像ファイル名>.png --config config/roi_config.json --roi smtias.whiteboard ``` OpenCV のウィンドウが開くので，マウスで矩形を選択して Enter で確定する．ESC でキャンセル． @@ -231,10 +231,10 @@ ```bash # ディレクトリ内の全画像を一括解析 -python scripts/run_uniformity.py --image data/smtias/whiteboard/ --config config/roi_config.json --roi smtias.whiteboard +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/ --config config/roi_config.json --roi smtias.whiteboard # 単一画像の解析 -python scripts/run_uniformity.py --image data/smtias/whiteboard/<画像ファイル名>.png --config config/roi_config.json --roi smtias.whiteboard +uv run python scripts/run_uniformity.py --image data/smtias/whiteboard/<画像ファイル名>.png --config config/roi_config.json --roi smtias.whiteboard ``` ### 出力 @@ -254,7 +254,7 @@ ### 起動方法 ```bash -.venv\Scripts\streamlit run scripts/viewer.py +uv run streamlit run scripts/viewer.py ``` ### 前提条件 diff --git a/docs/PROGRESS.md b/docs/PROGRESS.md index 6d5b8cb..da348df 100644 --- a/docs/PROGRESS.md +++ b/docs/PROGRESS.md @@ -50,3 +50,8 @@ - [x] **テンプレート同期（2026-09-29）**: programming-template の最新版（commands → skills 移行，規約の `.claude/rules/` 化，solo/team モード，ops-runner 等のエージェント，ntfy 通知フック）を取り込み，プロジェクト側を新構成へ追従． - **設計判断**: プロジェクト固有の GUIDE_06〜09（コーディング規約・ディレクトリ構造・テスト方針・エラーハンドリング）を path-scoped rule（`.claude/rules/{coding-style,project-structure,testing,error-handling}.md`）へ移行．docs に置くと読ませ忘れが起きるが，rule なら該当ファイル編集時に自動ロードされるため．内容は据え置き（構造図のみ実態に合わせ `config/` 追加・廃止済み `SmTIAS/` 参照コピーを削除）． - **追加**: 開発コマンド一覧 `ENV_04` を新設．GitHub の Dependabot alerts / security updates を有効化し `.github/dependabot.yml`（pip・github-actions，週 1）を追加．`.claude/project-mode` は solo． + +- [x] **pip + venv から uv へ移行（2026-09-29）**: 依存を `pyproject.toml` に一本化（開発用は `[dependency-groups] dev`）し，`requirements*.txt` を廃止．`uv.lock` と `.python-version`（3.12）でバージョンを固定． + - **動機**: 従来は `rawpy>=0.21.0` 以外が無指定で，環境を作るたびに numpy・opencv 等の版が変わり，報告書の数値の再現性を担保できなかった．また無指定では Dependabot が更新 PR をほぼ作れない（ecosystem を `pip` → `uv` に変更し，lock 更新 PR が届くようにした）． + - **検証**: `uv run pytest` で 357 passed / 24 skipped（skip はすべてサンプル DNG が `data/` に無いことによる）． + - **未着手**: `ruff check` に既存違反 299 件（E501 行長 268・I001 24 等）が残るため，依存更新の検証スイート（ENV_04）は `uv sync` ＋ `uv run pytest` のみとした． diff --git a/pyproject.toml b/pyproject.toml index 25fdc80..128d5a5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,5 +18,11 @@ "jinja2", ] +[dependency-groups] +dev = [ + "ruff", + "pytest", +] + [tool.pytest.ini_options] testpaths = ["tests"] diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index 68fc11a..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,2 +0,0 @@ -ruff -pytest diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index d408932..0000000 --- a/requirements.txt +++ /dev/null @@ -1,13 +0,0 @@ -numpy -opencv-python -scipy -matplotlib -pandas -streamlit -scikit-image -Pillow -rawpy>=0.21.0 - -# 将来機能用（現状コードでは未使用） -colour-science -jinja2 diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..8cdedab --- /dev/null +++ b/uv.lock @@ -0,0 +1,2173 @@ +version = 1 +revision = 3 +requires-python = ">=3.11" +resolution-markers = [ + "python_full_version >= '3.14' and 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